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If you’ve axed a Team Project using TfsDeleteProject.exe, you may still see remnants of it in the Source Control Explorer.  This can be very frustrating.  But the solution is simple.  You simply need to delete any workspaces that are currently referencing the source code in the deleted projects and they will go away.  (If you need to manage the deletion of multiple workspaces I highly recommend the Team Foundation Sidekicks tool from Attrice.  Thanks, Eugene!)

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